| Basic information |
| Official Symbol | VSIG1 |
| Description | V-set and immunoglobulin domain containing 1 |
| Other Aliases | RP5-889N15.1, 1700062D20Rik, GPA34, dJ889N15.1 |
| Other Description | V-set and immunoglobulin domain-containing protein 1; cell surface A33 antigen; glycoprotein A34 |
| Mutation type | Insert and frame-shift 98-99:A-R^T |
| Location | Scaffold000082_1:733990 755091 + |
| Wiki | Wikipedia GeneCard |
| Sequence |
| VSIG1 |
TTTTCAGGTCAAGTAAGCGTGGTGAAAGTAACCATCCCACACCGTTTTGT GAATGTGACTGTTGGATCTGACATCACTCTCGTCTGCACGTACACCACCT ATGTGGCCTCCATGGACAAGCTTTCCATCCAGTGGTCTTTCTTCCATAAG AAGGAACTTGGGCCAATTTCTCACAGCTCATATCTCAATGCTGACGGTAT GGAAGAAAAGGCAGTCAGTCTAATAATGGCATATGGAAGAGGTGCTGGGG GAAGATGTAGCTGGACCTCTCCAATTTACTATTCTGAAGGTGGAAAAGCT GAAGCTATTGGGCGGTTTAAAGATCGAATTGTAGGGTCCAACAGTCCAGG TAATGCGTCTATCACTATTTCACATATGCAGCCAACAGACAGTGGAATTT ACATCTGCGATGTTAACAACCCCCCAGACTTTGTCGGCCAAAACCAAGGC ATCCTCAACGTCAGTGTGTTAGTCAAACCTTCTAAGCCCTTTTGTAGCAT TCAAGGAAGACCAGAAACTGGCCACGCTATTTCCCTTTCTTGTCTCTCTA CACTTGGAACACCTTCCCCTGTATACTACTGGTATAAAGTTGAGGGAGGA GACATCATACCAGTGAAAGAAAGCTTCAATCCAGCCACAGGGAATTTGGT TATTGGAAATCTGACAAATTTTGAGCAAGGTTACTACCAGTGTACTGCCA TTAATAGTCTTGGCAATAGTTCCTGCGAAATTGATCTAACCTCTTCACAT CCAGAAGTCGGAATCATTGTTGGGGCCTTGGTAGGTACCCTCGTAGGTGT TGCCATTGTCACCTCTGTTGTGTGCTTTGCAAGGAACAAGGCAAAGGCAA AGGCAAAGGAAAGGAAAAGAGCATCTAAAAACACCACAGAGCTTGAACCA ATGACAAAAACAAGCCCAAGTGCAGAAGGAGAAGTCATGCCAACTGAAGA TGTTACCCAGCTAGAAGCATCCTCTGTTCATGAGAATGACCCTGCTAACA TTTTGGAGTCAGACCATGAGCCTGAAACAGAGCCTGTCCCGAAGACTGAC CCAGAGCCTGCTCAAGGACCAGAACCTATTCCTGTACCTGAGCTTGAAAT CCACCTGGAACCAGAGCCACAAGTGGAGCTGGAACTGGAGCCAGAGCCTG AATCTCAGCCTGGGGTTGTAGTTGAGCCTTTGTGTGATGAGGAAAAAGGA GGGGTTAAGGCA |
| Alignment |
| Align specie | Pep length | Pep align begin | Pep align end | Mutaion type and postion |
| Human | 423 | 15 | 423 | Insert and frame-shift 98-99:A-R^T |
Instructions:
*** -> premature termination codon; # -> frame shift
Alignment:
Human pep sequence --->
||||||||||||||||||||||
Treeshrew pep sequence --->
Treeshrew cds sequence --->
LeuAlaGlyGlnValSerValValGlnValThrIleProAspGlyPheValAsnValThr
|||||||||||||||||| |||||||||||| |||||||||||||||
PheSerGlyGlnValSerValValLysValThrIleProHisArgPheValAsnValThr
TTTTCAGGTCAAGTAAGCGTGGTGAAAGTAACCATCCCACACCGTTTTGTGAATGTGACT
ValGlySerAsnValThrLeuIleCysIleTyrThrThrThrValAlaSerArgGluGln
||||||||| |||||| ||| ||||||||| |||||||||
ValGlySerAspIleThrLeuValCysThrTyrThrThrTyrValAlaSerMetAspLys
GTTGGATCTGACATCACTCTCGTCTGCACGTACACCACCTATGTGGCCTCCATGGACAAG
LeuSerIleGlnTrpSerPhePheHisLysLysGluMetGluProIleSer >>>> Ta
|||||||||||||||||||||||||||||||||||| |||||||||
LeuSerIleGlnTrpSerPhePheHisLysLysGluLeuGlyProIleSer++
CTTTCCATCCAGTGGTCTTTCTTCCATAAGAAGGAACTTGGGCCAATTTCTgt
rget Intron 1 >>>> HisSerSerCysLeuSerThrGluGlyMetGluGluLysA
4515 bp ||||||||| ||| ||||||||||||||||
++HisSerSerTyrLeuAsnAlaAspGlyMetGluGluLysA
agCACAGCTCATATCTCAATGCTGACGGTATGGAAGAAAAGG
laValSerGlnCysLeuLysMetThrHisAlaArgAspAla-ArgGlyArgCysSerTrp
|||||||| ||| ||| ||| |||# |||||||||||||||
laValSer------LeuIleMetAlaTyrGlyArgGlyAla#GlyGlyArgCysSerTrp
CAGTCAGT------CTAATAATGGCATATGGAAGAGGTGCTTGGGGGAAGATGTAGCTGG
ThrSerGlu >>>> Target Intron 2 >>>> IleTyrPheSerGlnGlyGlyG
|||||| 7381 bp |||||| ||| ||||||
ThrSerPro++ ++IleTyrTyrSerGluGlyGlyL
ACCTCTCCAgt agATTTACTATTCTGAAGGTGGAA
lnAlaValAlaIleGlyGlnPheLysAspArgIleThrGlySerAsnAspProGlyAsnA
||| ||||||||| ||||||||||||||| ||||||||| ||||||||||
ysAlaGluAlaIleGlyArgPheLysAspArgIleValGlySerAsnSerProGlyAsnA
AAGCTGAAGCTATTGGGCGGTTTAAAGATCGAATTGTAGGGTCCAACAGTCCAGGTAATG
laSerIleThrIleSerHisMetGlnProAlaAspSerGlyIleTyrIleCysAspValA
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
laSerIleThrIleSerHisMetGlnProThrAspSerGlyIleTyrIleCysAspValA
CGTCTATCACTATTTCACATATGCAGCCAACAGACAGTGGAATTTACATCTGCGATGTTA
snAsnProProAspPheLeuGlyGlnAsnGlnGlyIleLeuAsnValSerValLeu{V}
||||||||||||||||| ||||||||||||||||||||||||||||||||||||{|}
snAsnProProAspPheValGlyGlnAsnGlnGlyIleLeuAsnValSerValLeu{V}+
ACAACCCCCCAGACTTTGTCGGCCAAAACCAAGGCATCCTCAACGTCAGTGTGTTA{G}g
>>>> Target Intron 3 >>>> {al}LysProSerLysProLeuCysSerValG
5269 bp {||}||||||||||||||| |||||| |
+ ++{al}LysProSerLysProPheCysSerIleG
t ag{TC}AAACCTTCTAAGCCCTTTTGTAGCATTC
lnGlyArgProGluThrGlyHisThrIleSerLeuSerCysLeuSerAlaLeuGlyThrP
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
lnGlyArgProGluThrGlyHisAlaIleSerLeuSerCysLeuSerThrLeuGlyThrP
AAGGAAGACCAGAAACTGGCCACGCTATTTCCCTTTCTTGTCTCTCTACACTTGGAACAC
roSerProValTyrTyrTrpHisLysLeuGluGlyArgAspIleValProValLysGluA
|||||||||||||||||||| ||| |||||| |||||| ||||||||||||
roSerProValTyrTyrTrpTyrLysValGluGlyGlyAspIleIleProValLysGluS
CTTCCCCTGTATACTACTGGTATAAAGTTGAGGGAGGAGACATCATACCAGTGAAAGAAA
snPhe{A} >>>> Target Intron 4 >>>> {sn}ProThrThrGlyIleLeuV
|||{|} 358 bp {||}||| |||||| ||||
erPhe{A}++ ++{sn}ProAlaThrGlyAsnLeuV
GCTTC{A}gt ag{AT}CCAGCCACAGGGAATTTGG
alIleGlyAsnLeuThrAsnPheGluGlnGlyTyrTyrGlnCysThrAlaIleAsnArgL
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
alIleGlyAsnLeuThrAsnPheGluGlnGlyTyrTyrGlnCysThrAlaIleAsnSerL
TTATTGGAAATCTGACAAATTTTGAGCAAGGTTACTACCAGTGTACTGCCATTAATAGTC
euGlyAsnSerSerCysGluIleAspLeuThrSerSer{H} >>>> Target Intro
||||||||||||||||||||||||||||||||||||||{|} 1300 bp
euGlyAsnSerSerCysGluIleAspLeuThrSerSer{H}++
TTGGCAATAGTTCCTGCGAAATTGATCTAACCTCTTCA{C}gt
n 5 >>>> {is}ProGluValGlyIleIleValGlyAlaLeuIleGlySerLeuValG
{||}|||||||||||||||||||||||||||||| ||| |||||||
++{is}ProGluValGlyIleIleValGlyAlaLeuValGlyThrLeuValG
ag{AT}CCAGAAGTCGGAATCATTGTTGGGGCCTTGGTAGGTACCCTCGTAG
lyAlaAlaIleIleIleSerValValCysPheAlaArgAsnLysAlaLysAlaLysAlaL
|| |||||| |||||||||||||||||||||||||||||||||||||||||||
lyValAlaIleValThrSerValValCysPheAlaArgAsnLysAlaLysAlaLysAlaL
GTGTTGCCATTGTCACCTCTGTTGTGTGCTTTGCAAGGAACAAGGCAAAGGCAAAGGCAA
ysGluArgAsn<-><->SerLysThrIleAlaGluLeu{Gl} >>>> Target Intr
|||||||| |||||| ||||||{||} 1066 bp
ysGluArgLysArgAlaSerLysAsnThrThrGluLeu{Gl}++
AGGAAAGGAAAAGAGCATCTAAAAACACCACAGAGCTT{GA}gt
on 6 >>>> {u}ProMetThrLysIleAsnProArgGlyGluSerGluAlaMetProA
{|}|||||||||||| ||| ||| ||| ||||||
++{u}ProMetThrLysThrSerProSerAlaGluGlyGluValMetProT
ag{A}CCAATGACAAAAACAAGCCCAAGTGCAGAAGGAGAAGTCATGCCAA
rgGluAspAlaThrGlnLeuGluValThrLeuProSerSerIleHisGluThrGlyProA
|||||| |||||||||||| |||||| |||||| |||
hrGluAspValThrGlnLeuGluAla---------SerSerValHisGluAsnAspProA
CTGAAGATGTTACCCAGCTAGAAGCA---------TCCTCTGTTCATGAGAATGACCCTG
spThrIleGlnGluProAspTyrGluPro<-><->LysProThrGlnGluProAlaProG
||| ||| ||| |||||| ||| ||||
laAsnIleLeuGluSerAspHisGluProGluThrGluProValProLysThrAspProG
CTAACATTTTGGAGTCAGACCATGAGCCTGAAACAGAGCCTGTCCCGAAGACTGACCCAG
luProAlaProGlySerGluProMetAlaValProAspLeuAspIleGluLeuGluLeuG
|||||||| ||| |||||| |||||| ||| ||| |||||| |
luProAlaGlnGlyProGluProIleProValProGluLeuGluIleHisLeuGluProG
AGCCTGCTCAAGGACCAGAACCTATTCCTGTACCTGAGCTTGAAATCCACCTGGAACCAG
luProGluThrGlnSerGluLeuGluProGluProGluProGluProGluSerGluProG
||||| |||||| |||||||||||||||||| ||||
luProGlnValGluLeuGluLeu------------GluProGluProGluSerGlnProG
AGCCACAAGTGGAGCTGGAACTG------------GAGCCAGAGCCTGAATCTCAGCCTG
lyValValValGluProLeuSerGluAspGluLysGlyValValLysAla
|||||||||||||||||||| ||||||||| |||||||||
lyValValValGluProLeuCysAspGluGluLysGlyGlyValLysAla
GGGTTGTAGTTGAGCCTTTGTGTGATGAGGAAAAAGGAGGGGTTAAGGCA
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