| Basic information |
| Official Symbol | HCFC1R1 |
| Description | host cell factor C1 regulator 1 (XPO1 dependent) |
| Other Aliases | HPIP |
| Other Description | HCF-1 beta-propeller interacting protein; HCF-1 beta-propeller-interacting protein; host cell factor C1 regulator 1; host cell factor C1 regulator 1 (XPO1 dependant) |
| Mutation type | premature termination 36:R->TGA |
| Location | Scaffold141247_1:452598 453175 + |
| Wiki | Wikipedia GeneCard |
| Sequence |
| HCFC1R1 |
AGCTCTCCTCTCTGAGGAGCTGTGCCCATGAGCACCAAGCGGCGCCTGGA GGAGAAGCAGGAGCCCCTGCACAAACAGTTCTTATCCGAGGACAACATGG CCACCCACTTCTCTCGACTCAGCCTGCACAATGACCACCCGTACTGCAGC CCCCCCATGGTTGTGCCCCCACTCCTTCCCTCTTCCAGGAGCCCTTGCTC TGAGCTGCTTCTCTGGCGCTACCCTGGGAGCCTAATCCCTGAGGCTCTCC GACTCTTGAGGCTGGGGGACACTCCCAGCCCCTACTATGCTGCAACCTCA GCTGGGGACGTACCGGAGCTC |
| Alignment |
| Align specie | Pep length | Pep align begin | Pep align end | Mutaion type and postion |
| Human | 138 | 32 | 138 | Premature termination 36:R->TGA |
Instructions:
*** -> premature termination codon; # -> frame shift
Alignment:
Human pep sequence --->
||||||||||||||||||||||
Treeshrew pep sequence --->
Treeshrew cds sequence --->
SerSerProLeuArgGlyAlaValProMetSerThrLysArgArgLeuGluGluGlu{Gl}
|||||||||||| ||||||||||||||||||||||||||||||||||||||| {||}
SerSerProLeu***GlyAlaValProMetSerThrLysArgArgLeuGluGluLys{Gl}+
AGCTCTCCTCTCTGAGGAGCTGTGCCCATGAGCACCAAGCGGCGCCTGGAGGAGAAG{CA}g
>>>> Target Intron 1 >>>> {n}GluProLeuArgLysGlnPheLeuSerGluG
107 bp {|}||||||||| ||||||||||||||||||
+ ++{n}GluProLeuHisLysGlnPheLeuSerGluA
t ag{G}GAGCCCCTGCACAAACAGTTCTTATCCGAGG
luAsnMetAlaThrHisPheSerGlnLeuSerLeuHisAsnAspHisProTyrCysSerPro
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
spAsnMetAlaThrHisPheSerArgLeuSerLeuHisAsnAspHisProTyrCysSerPro
ACAACATGGCCACCCACTTCTCTCGACTCAGCCTGCACAATGACCACCCGTACTGCAGCCCC
ProMetThrPheSerPro{A} >>>> Target Intron 2 >>>> {la}LeuProPr
|||||| |||{ } 150 bp { }||||||
ProMetValValProPro{L}-- -+{eu}LeuProSe
CCCATGGTTGTGCCCCCA{C}tc tg{TC}CTTCCCTC
oLeuArgSerProCysSerGluLeuLeuLeuTrpArgTyrProGlySerLeuIleProGluA
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
rSerArgSerProCysSerGluLeuLeuLeuTrpArgTyrProGlySerLeuIleProGluA
TTCCAGGAGCCCTTGCTCTGAGCTGCTTCTCTGGCGCTACCCTGGGAGCCTAATCCCTGAGG
laLeuArgLeuLeuArgLeuGlyAspThrProSerProProTyrProAlaThrProAlaGly
|||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||
laLeuArgLeuLeuArgLeuGlyAspThrProSerProTyrTyrAlaAlaThrSerAlaGly
CTCTCCGACTCTTGAGGCTGGGGGACACTCCCAGCCCCTACTATGCTGCAACCTCAGCTGGG
AspIleMetGluLeu
||| ||||||
AspValProGluLeu
GACGTACCGGAGCTC
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